MyTrainingSet.txt - Example training set file to be used in the Classifier (see section V). Second exception was: ERROR: Database query failed for connection "MainThread"įROM Per_Image, (SELECT TableNumber, ImageNumber FROM CPA_per_image, Well_ID_Table WHERE CPA_per_image.well=Well_ID_Table.well AND Well_ID_Table.Gene REGEXP 'CDK.') AS subquery_0Įxception was: no such table: CPA_per_imageįile "cpa\density.pyc", line 215, in update_figpanelįile "cpa\density.pyc", line 234, in _load_pointsįile "cpa\dbconnect. example.properties - Configuration file for CPA (see section III). properties it is placed into the Default Output Folder specified by CellProfiler. This file was produced by the CellProfiler QC pipeline and has the extension. A dialog box will appear requesting a properties file. o After youve added your images, go to the next module. sample preparation to imaging and analysis. CellProfiler can read any type of file format so there is no need to convert your files before use. WHERE Per_Image.ImageNumber = subquery_0.ImageNumber "įirst exception was: no such table: CPA_per_image CellProfiler Analyst properties file (with an SQLite database file). Start CellProfiler Analyst (CPA) as instructed in the installation help. CellProfiler - program for interactively creating image analysis pipelines. Query was: "SELECT Per_Image.ImageNumber, Per_Image.ImageNumberįROM Per_Image, (SELECT TableNumber, ImageNumber FROM CPA_per_image, Well_ID_Table WHERE CPA_per_image.well=Well_ID_Table.well AND Well_ID_Table.Gene REGEXP 'CDK. This pipeline shows how to do both of these tasks, and demonstrates how various modules may be used to accomplish the same result. Thus, many biologists find they need software to analyze images easily and accurately. Cell/particle counting, and scoring the percentage of stained objects: CellProfiler is commonly used to count cells or other objects as well as percent-positives, by measuring the per-cell staining intensity. Looking at the resulting images by eye would be extremely tedious, not to mention subjective. Yes, I commented in the example filters but arrived at same error message, pasted below.Ĭould this have something to do with user interface generated filters not being saved between sessions? Or is that expected behaviour?ĭBException: ERROR: Database query failed for connection "MainThread" and failed to reconnect Author summary The big-data revolution has struck biology: it is now common for robots to prepare cell samples and take thousands of microscopy images.
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |